Esophageal Carcinoma (TCGA, Nature 2017)

Summary

Esophageal Carcinoma (TCGA, Nature 2017) is a study catalogued by cBioPortal DataHub under the cancer-type code egc. EvidenceHelix groups it with esophagus and stomach studies and lists it in the TCGA (other releases) collection.

Study description

Whole exome sequencing of 559 esophageal and gastric carcinoma tumors with matched normals.

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Nature 2017

Linked PubMed records: PMID 28052061

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

stes_tcga_pub

Short name

Stomach/Esophageal (TCGA)

Source cancer-type code

egc

Reference genome

not given

Source access groups

not given

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Nature 2017

• PubMed record 28052061 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Esophageal Cancer-TRAP Project (MSK, Lancet Oncol 2020)

  Targeted and WES recapture sequencing of tumor/normal samples from 37 Esophageal Cancer patients.

  Esophagus and stomachMSK studiesSource code egcPubMed 1

• Esophagogastric Cancer (MSK, Clin Cancer Res 2022)

  Targeted sequencing of 237 esophagogastric tumor/normal pairs via MSK-IMPACT platform.

  Esophagus and stomachMSK studiesSource code egcPubMed 1

• Esophagogastric Cancer (MSK, Clin Cancer Res 2023)

  Whole exome sequencing of 64 esophagogastric cancers and their matched normal samples.

  Esophagus and stomachMSK studiesSource code egcPubMed 1

• Gastric Adenocarcinoma (TMUCIH, PNAS 2015)

  Whole-exome sequencing of 78 Gastric Adenocarcinomas and their matched normal samples.

  Esophagus and stomachOther published and consortium studiesSource code egcPubMed 1

• Metastatic Esophagogastric Cancer (MSK, Cancer Discovery 2017)

  Targeted sequencing of 341 samples from 305 metastatic esophagogastric cancer patients

  Esophagus and stomachMSK studiesSource code egcPubMed 1

• Stomach Adenocarcinoma (TCGA, Nature 2014)

  Whole-exome sequencing of 295 primary gastric adenocarcinomas tumors with matched normals. TCGA Stomach Adenocarcinoma Project; raw data at the NCI (https://tcga-data.nci.nih.gov/docs/publications/stad_2014/).

  Esophagus and stomachTCGA (other releases)Source code stadPubMed 1

• Esophageal Adenocarcinoma (DFCI, Nat Genet 2013)

  Whole-exome sequencing of 149 tumor/normal pairs and whole-genome sequencing of 16 pairs from 149 esophageal adenocarcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code escaPubMed 1

• Esophageal Adenocarcinoma (TCGA, PanCancer Atlas)

  Esophageal Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratla…

  Esophagus and stomachTCGA PanCancer AtlasSource code escaPubMed 11

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