Cancer family · grouped by EvidenceHelix from study titles

Skin and eye: 28 studies

Public cancer genomics studies in this group, with the collection each belongs to. Open a study for its description, citation and original source links.

• Acral Melanoma (TGEN, Genome Res 2017)

  Whole exome sequencing and transcriptome analysis of 34 Acral Melanoma patients (33 with matched normals).

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Basal Cell Carcinoma (UNIGE, Nat Genet 2016)

  Whole-exome sequencing of 126 basal cell carcinoma tumor/normal pairs; targeted sequencing of 163 sporadic samples (40 tumor/normal pairs) and 4 Gorlin symdrome basal cell carcinomas.

  Skin and eyeOther published and consortium studiesSource code bccPubMed 1

• Cutaneous Squamous Cell Carcinoma (DFCI, Clin Cancer Res 2015)

  Targeted sequencing of 29 metastatic cutaneous squamous cell carcinoma samples.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (MD Anderson, Clin Cancer Res 2014)

  Whole-exome sequencing of tumor/normal pairs from 39 aggressive cutaneous squamous cell carcinoma cases.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (UCSF, NPJ Genom Med 2021)

  Catalogue of driver genes in cutaneous squamous cell carcinoma. Meta-analysis of 105 normal/tumor pairs.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (UOW, Front Oncol 2022)

  Whole genome sequencing of 25 metastatic cutaneous squamous cell carcinoma and their matched normals. Generated by the Ranson Lab 2022.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Desmoplastic Melanoma (Broad Institute, Nat Genet 2015)

  Exome/Whole Genome sequencing of 20 desmoplastic melanoma tumor/normal pairs.

  Skin and eyeOther published and consortium studiesSource code desmPubMed 1

• Melanoma (Broad/Dana Farber, Nature 2012)

  Whole Genome Sequencing of 25 metastatic melanoma samples with matched normals

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Melanoma (MSK, Cell 2017) - iAtlas Harmonized

  Whole-exome sequencing and neoantigen landscape analysis of tumors from 64 advanced melanoma patients, profiled before and after nivolumab treatment. The reprocessing of raw sequencing data is coordinated by CRI iAtla…

  Skin and eyeMSK studiesSource code melPubMed 1

• Melanoma (MSK, Clin Cancer Res 2021)

  Targeted sequencing (MSK-IMPACT) of 696 melanoma tumor/normal pairs.

  Skin and eyeMSK studiesSource code melPubMed 1

• Melanoma (MSK, NEJM 2014)

  Whole-exome sequencing of 64 pretreated (ipilimumab or tremelimumab) melanoma tumor-normal pairs.

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Melanomas (TCGA, Cell 2015)

  Whole-exome sequencing of 333 primary and/or metastatic melanomas.

  Skin and eyeTCGA (other releases)Source code skcmPubMed 1

• Metastatic Melanoma (DFCI, Nat Med. 2019) - iAtlas Harmonized

  Whole-exome sequencing and neoantigen landscape analysis of 122 patients with metastatic melanoma treated with anti-PD1 ICB, along with their matched normal samples. The reprocessing of raw sequencing data is coordina…

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Metastatic Melanoma (DFCI, Nature Medicine 2019)

  Whole-exome sequencing of 144 pre-treatment samples from 144 patients with metastatic melanoma treated with anti-PD1 ICB. Related Dataset: A harmonized version with extended neoantigen annotations (122 samples) is ava…

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Metastatic Melanoma (DFCI, Science 2015)

  Whole-exome sequencing of 110 metastatic melanoma tumor-normal pairs.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Metastatic Melanoma (Immunotherapy Trial, Cancer Cell 2019) - iAtlas Harmonized

  Whole-exome sequencing and neoantigen landscape analysis of 158 metastatic melanomas treated with anti-PD-1 monotherapy or combined anti-PD-1 and anti-CTLA-4 therapy and their matched normals. A subset of these patien…

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Metastatic Melanoma (MSK, JCO Precis Oncol 2017)

  Targeted sequencing of pre-treatment 66 Melanoma tumor samples. PubMed (https://ascopubs.org/doi/full/10.1200/PO.16.00054)

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Metastatic Melanoma (UCLA, Cell 2016)

  Whole-exome sequencing of 38 pretreated (pembrolizumab, nivolumab) melanoma tumor-normal pairs. Related Dataset: A harmonized version with extended neoantigen annotations (27 samples) is available: iAtlas Harmonized V…

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Metastatic Melanoma (UCLA, Cell 2016) - iAtlas Harmonized

  Whole-exome sequencing and neoantigen landscape analysis of 27 pretreatment melanoma tumors and their matched normals. The reprocessing of raw sequencing data is coordinated by CRI iAtlas (https://cri-iatlas.org/). Re…

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Retinoblastoma (MSK, Cancers 2021)

  Targeted sequencing of 83 Retinoblastoma tumor-normal pairs via MSK-IMPACT. Genomic data provided is limited to somatic alterations.

  Skin and eyeMSK studiesSource code rblPubMed 1

• Skin Cutaneous Melanoma (Broad, Cell 2012)

  Whole-exome sequencing of 121 melanoma samples with matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma (TCGA, Firehose Legacy)

  TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/SKCM/20160128/). Previously known as TCGA Provisional.

  Skin and eyeTCGA Firehose LegacySource code skcm

• Skin Cutaneous Melanoma (TCGA, PanCancer Atlas)

  Skin Cutaneous Melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/…

  Skin and eyeTCGA PanCancer AtlasSource code skcmPubMed 12

• Skin Cutaneous Melanoma (Yale, Nat Genet 2012)

  Exome sequencing of 147 melanoma samples with 99 matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma(Broad, Cancer Discov 2014)

  Exome Sequencing of tumors (with matched normals) from 45 patients with BRAFV600-mutant metastatic melanoma who received vemurafenib or dabrafenib monotherapy.

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Uveal Melanoma (QIMR, Oncotarget 2016)

  Whole-genome or whole-exome sequencing of tumor/normal pairs from 28 uveal melanoma samples.

  Skin and eyeOther published and consortium studiesSource code umPubMed 1

• Uveal Melanoma (TCGA, Firehose Legacy)

  TCGA Uveal Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/UVM/20160128/). Previously known as TCGA Provisional.

  Skin and eyeTCGA Firehose LegacySource code um

• Uveal Melanoma (TCGA, PanCancer Atlas)

  Uveal melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/…

  Skin and eyeTCGA PanCancer AtlasSource code umPubMed 11