Esophageal Adenocarcinoma (DFCI, Nat Genet 2013)

Summary

Esophageal Adenocarcinoma (DFCI, Nat Genet 2013) is a study catalogued by cBioPortal DataHub under the cancer-type code esca. EvidenceHelix groups it with esophagus and stomach studies.

Study description

Whole-exome sequencing of 149 tumor/normal pairs and whole-genome sequencing of 16 pairs from 149 esophageal adenocarcinoma patients.

Text as published in the source's study metadata.

Citation & PubMed

Dulak et al. Nat Genet 2013

Linked PubMed records: PMID 23525077

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

esca_broad

Short name

Esophagus (Broad)

Source cancer-type code

esca

Reference genome

not given

Source access groups

not given

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.

Citations

Dulak et al. Nat Genet 2013

• PubMed record 23525077 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Esophageal Adenocarcinoma (TCGA, PanCancer Atlas)

  Esophageal Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratla…

  Esophagus and stomachTCGA PanCancer AtlasSource code escaPubMed 11

• Esophageal Carcinoma (TCGA, Firehose Legacy)

  TCGA Esophageal Carcinoma . Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/ESCA/20160128/). Previously known as TCGA Provisional.

  Esophagus and stomachTCGA Firehose LegacySource code esca

• Esophageal Squamous Cell Carcinoma (ICGC, Nature 2014)

  Whole-genome or whole-exome sequencing of 88 esophageal squamous cell carcinoma tumor/normal pairs.

  Esophagus and stomachOther published and consortium studiesSource code esccPubMed 1

• Esophageal Squamous Cell Carcinoma (UCLA, Nat Genet 2014)

  Whole exome sequencing (WXS) or targeted deep sequencing (TDS) of 139 paired esophageal squamous cell carcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code esccPubMed 1

• Gastric Adenocarcinoma (TMUCIH, PNAS 2015)

  Whole-exome sequencing of 78 Gastric Adenocarcinomas and their matched normal samples.

  Esophagus and stomachOther published and consortium studiesSource code egcPubMed 1

• Gastric Cancer (OncoSG, 2018)

  Whole-genome sequencing of 147 gastric cancer tumors with matched normals. Courtesy of OncoSG (https://src.gisapps.org/OncoSG/).

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (Pfizer and UHK, Nat Genet 2014)

  Whole genome sequencing of 100 gastric cancer tumor-normal pairs from the University of Hong Kong and Pfizer.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (U Tokyo, Nat Genet 2014)

  Whole exome sequencing of 30 diffuse-type gastric adenocarcinoma samples (with matched normals) from the University of Tokyo.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

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