Cancer family · grouped by EvidenceHelix from study titles

Blood, lymph and bone marrow: 38 studies

Public cancer genomics studies in this group, with the collection each belongs to. Open a study for its description, citation and original source links.

• Acute Lymphoblastic Leukemia (St Jude, Nat Genet 2015)

  Comprehensive profiling of infant MLL-rearranged acute lymphoblastic leukemia (MLL-R ALL)

  Blood, lymph and bone marrowOther published and consortium studiesSource code bllPubMed 1

• Acute Lymphoblastic Leukemia (St Jude, Nat Genet 2016)

  Whole-genome and/or whole-exome sequencing of ERG-altered B-ALL tumor/normal pairs.

  Blood, lymph and bone marrowOther published and consortium studiesSource code bllPubMed 1

• Acute Myeloid Leukemia (OHSU, Cancer Cell 2022)

  Whole-exome and transcriptomic sequencing of 942 acute myeloid leukemia samples (with 500 matched normals) from the Beat AML program.

  Blood, lymph and bone marrowOther published and consortium studiesSource code amlPubMed 1

• Acute Myeloid Leukemia (OHSU, Nature 2018)

  Whole-exome sequencing of 672 acute myeloid leukemia samples (with 454 matched normals) from the Beat AML program.

  Blood, lymph and bone marrowOther published and consortium studiesSource code amlPubMed 1

• Acute Myeloid Leukemia (TCGA, Firehose Legacy)

  TCGA Acute Myeloid Leukemia. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LAML/20160128/). Previously known as TCGA Provisional.

  Blood, lymph and bone marrowTCGA Firehose LegacySource code aml

• Acute Myeloid Leukemia (TCGA, NEJM 2013)

  Whole-genome or whole-exome sequencing analysis of 200 adult de novo AML tumor/normal pairs. TCGA Acute Myeloid Leukemia Project; raw data at the NCI (https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseTy…

  Blood, lymph and bone marrowTCGA (other releases)Source code amlPubMed 1

• Acute Myeloid Leukemia (TCGA, PanCancer Atlas)

  Acute Myeloid Leukemia TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/p…

  Blood, lymph and bone marrowTCGA PanCancer AtlasSource code amlPubMed 11

• Acute myeloid leukemia or myelodysplastic syndromes (WashU, 2016)

  Enhanced exome or targeted sequencing of 116 acute myeloid leukemia (AML) or myelodysplastic syndromes (MDS) patients' tumor/normal pairs .

  Blood, lymph and bone marrowOther published and consortium studiesSource code mnmPubMed 1

• Chronic Lymphocytic Leukemia (Broad, Cell 2013)

  Whole-exome sequencing of 160 CLL tumor/normal pairs.

  Blood, lymph and bone marrowOther published and consortium studiesSource code cllsllPubMed 1

• Chronic Lymphocytic Leukemia (Broad, Nature 2015)

  Whole exome sequencing of 537 chronic lymphocytic leukemia tumor/normal pairs.

  Blood, lymph and bone marrowOther published and consortium studiesSource code cllsllPubMed 1

• Chronic Lymphocytic Leukemia (Broad, Nature Genetics 2022)

  Whole genome and whole exome sequencing of 1,154 samples from 1,148 patients with Chronic Lymphocytic Leukemia and monoclonal B cell lymphocytosis and their matched normals.

  Blood, lymph and bone marrowOther published and consortium studiesSource code cllsllPubMed 1

• Chronic lymphocytic leukemia (ICGC, Nature Genetics 2011)

  Whole-exome sequencing of 105 Chronic Lymphocytic Leukemia samples.

  Blood, lymph and bone marrowOther published and consortium studiesSource code cllsllPubMed 1

• Chronic Lymphocytic Leukemia (IUOPA, Nature 2015)

  Mutation data from whole-genome or whole-exome sequencing of 428 CLL, 54 MBL, and 24 SLL tumor/normal pairs.

  Blood, lymph and bone marrowOther published and consortium studiesSource code cllsllPubMed 1

• Classical Hodgkins Lymphoma (SCCC, Blood Cancer Discov 2023)

  Whole-exome sequencing of 36 cases and whole-genome sequencing of 25 cases of classical hodgkins lymphomas and their matched normals.

  Blood, lymph and bone marrowOther published and consortium studiesSource code chlPubMed 1

• Cutaneous T Cell Lymphoma (Columbia U, Nat Genet 2015)

  Whole-Exome Sequencing (WXS) of tumor-normal sample pairs from 25 patients with Sezary Syndrome and 17 patients with other Cutaneous T Cell Lymphoma (CTCLs).

  Blood, lymph and bone marrowOther published and consortium studiesSource code nhlPubMed 1

• Diffuse Large B cell Lymphoma (DFCI, Nat Med 2018)

  Whole-exome sequencing of tumor/matching normal sample pairs from 135 DLBCL patients.

  Blood, lymph and bone marrowOther published and consortium studiesSource code dlbclnosPubMed 1

• Diffuse Large B-cell Lymphoma (BCGSC, Blood 2013)

  Whole genome sequencing of 40 DLBCL tumor/normal pairs and 13 cell lines.

  Blood, lymph and bone marrowOther published and consortium studiesSource code nhlPubMed 1

• Diffuse Large B-Cell Lymphoma (Broad, PNAS 2012)

  Whole exome sequencing of 58 primary DLBCL samples and their matched normals.

  Blood, lymph and bone marrowOther published and consortium studiesSource code nhlPubMed 1

• Diffuse Large B-Cell Lymphoma (Duke, Cell 2017)

  Whole-exome sequencing of 1,001 Diffuse Large B Cell Lymphoma (DLBCL) tumors (N = 1001) and paired-normal tissue (N = 400).

  Blood, lymph and bone marrowOther published and consortium studiesSource code dlbclnosPubMed 1

• Diffuse Large B-Cell Lymphoma (MSK, Haematologica 2024)

  Targeted sequencing of 396 diffuse large B-cell lymphoma samples and their matched normals via MSK-IMPACT.

  Blood, lymph and bone marrowMSK studiesSource code mbnPubMed 1

• Diffuse Large B-Cell Lymphoma (TCGA, PanCancer Atlas)

  Diffuse Large B-Cell Lymphoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancancer…

  Blood, lymph and bone marrowTCGA PanCancer AtlasSource code dlbclnosPubMed 11

• Germ Cell Tumors and Shared Leukemias (MSK, J Clin Invest 2020)

  Targeted and WES sequencing of germ cell tumor and shared leukemia samples.

  Blood, lymph and bone marrowMSK studiesSource code testisPubMed 1

• Histiocytosis Cobimetinib (MSK, Nature 2019)

  Targeted and whole exome sequencing of 52 histiocytosis tumor/normal pairs.

  Blood, lymph and bone marrowMSK studiesSource code hdcnPubMed 1

• Hypodiploid Acute Lymphoid Leukemia (St Jude, Nat Genet 2013)

  Whole genome or exome sequencing of 44 (20 whole genome, 20 exome) ALL tumor/normal pairs.

  Blood, lymph and bone marrowOther published and consortium studiesSource code myeloidPubMed 1

• Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (TCGA, Firehose Legacy)

  TCGA Lymphoid Neoplasm Diffuse Large B-cell Lymphoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/DLBC/20160128/). Previously known as TCGA Provisional.

  Blood, lymph and bone marrowTCGA Firehose LegacySource code dlbclnos

• Lymphoma Cell Lines (MSK, Blood 2020)

  Targeted sequencing of 34 lymphoma cell lines using HemePACT_v3

  Blood, lymph and bone marrowMSK studiesSource code lymphPubMed 1

• Mantle Cell Lymphoma (IDIBIPS, PNAS 2013)

  Whole exome sequencing of 29 primary mantle cell lymphomas and their matched normals.

  Blood, lymph and bone marrowOther published and consortium studiesSource code mclPubMed 1

• Mature B-cell malignancies (MD Anderson Cancer Center)

  We performed targeted deep sequencing of 380 recurrently mutated genes across a cohort of 755 mature B-cell malignancies to define conserved and disease-specific patterns of genomic alterations.PubMed (https://www.bio…

  Blood, lymph and bone marrowOther published and consortium studiesSource code mbn

• Mature B-Cell Neoplasms (Simon Fraser University, Blood 2023)

  Comprehensive whole genome sequencing of 297 Burrkitt Lymphoma (BL) and diffuse large B-cell lymphoma (DLBCL) samples and their matched normals.

  Blood, lymph and bone marrowOther published and consortium studiesSource code mbnPubMed 1

• Mature T and NK Neoplasms (MSK, Blood Adv 2023)

  Targeted sequencing of 132 Mature T and NK Neoplasms and their matched normals via MSK-IMPACT.

  Blood, lymph and bone marrowMSK studiesSource code mtnnPubMed 1

• Multiple Myeloma (Broad, Cancer Cell 2014)

  Whole-exome or whole-genome sequencing of 203 multiple myeloma paired tumor/normal sample pairs.

  Blood, lymph and bone marrowOther published and consortium studiesSource code pcmPubMed 1

• Myelodysplastic Syndromes (MDS IWG, IPSSM, NEJM Evidence 2022)

  International Working Group for the prognosis of Myelodysplastic Syndromes. Derivation of the Molecular International Prognosis Scoring System for MDS. Comprehensive profiling of 3,323 treatment-naive MDS samples. Dat…

  Blood, lymph and bone marrowOther published and consortium studiesSource code mds

• Myeloproliferative Neoplasms (CIMR, NEJM 2013)

  Whole exome sequencing of paired tumor/normal pairs from 151 cases of Myeloproliferative Neoplasms.

  Blood, lymph and bone marrowOther published and consortium studiesSource code mpnPubMed 1

• Non-Hodgkin Lymphoma (BCGSC, Nature 2011)

  Whole genome or whole exome sequencing of 14 NHL tumors and their matched normals.

  Blood, lymph and bone marrowOther published and consortium studiesSource code nhlPubMed 1

• Pediatric Acute Lymphoid Leukemia - Phase II (TARGET, 2018)

  Whole genome or whole exome sequencing on 298 Pediatric Acute Lymphoid Leukemia - Phase II samples. Comprehensive profiling of ALL Phase 2 samples. TARGET data is intended exclusively for biomedical research using ped…

  Blood, lymph and bone marrowNCI TARGETSource code bll

• Pediatric Acute Myeloid Leukemia (St. Jude, Nat Genet 2024)

  Molecular profiling of 887 pediatric acute myeloid leukemia cases and their matched normals using RNA-Seq, WES and WGS.

  Blood, lymph and bone marrowOther published and consortium studiesSource code amlPubMed 1

• Pediatric Acute Myeloid Leukemia (TARGET, 2018)

  Whole genome or whole exome sequencing on 333 TARGET-AML samples. Comprehensive profiling of TARGET-AML samples. TARGET data is intended exclusively for biomedical research using pediatric data (i.e., the research obj…

  Blood, lymph and bone marrowNCI TARGETSource code aml

• Primary Central Nervous System Lymphoma (Mayo Clinic, Clin Cancer Res 2015)

  Exome sequencing of 19 immunocompetent primary central nervous system lymphoma (PCNSL) samples.

  Blood, lymph and bone marrowOther published and consortium studiesSource code nhlPubMed 1