Esophageal Squamous Cell Carcinoma (ICGC, Nature 2014)

Summary

Esophageal Squamous Cell Carcinoma (ICGC, Nature 2014) is a study catalogued by cBioPortal DataHub under the cancer-type code escc. EvidenceHelix groups it with esophagus and stomach studies.

Study description

Whole-genome or whole-exome sequencing of 88 esophageal squamous cell carcinoma tumor/normal pairs.

Text as published in the source's study metadata.

Citation & PubMed

Song et al. Nature 2014

Linked PubMed records: PMID 24670651

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

escc_icgc

Short name

Esophagus sq (ICGC)

Source cancer-type code

escc

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.

Citations

Song et al. Nature 2014

• PubMed record 24670651 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Esophageal Squamous Cell Carcinoma (UCLA, Nat Genet 2014)

  Whole exome sequencing (WXS) or targeted deep sequencing (TDS) of 139 paired esophageal squamous cell carcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code esccPubMed 1

• Esophageal Adenocarcinoma (DFCI, Nat Genet 2013)

  Whole-exome sequencing of 149 tumor/normal pairs and whole-genome sequencing of 16 pairs from 149 esophageal adenocarcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code escaPubMed 1

• Gastric Adenocarcinoma (TMUCIH, PNAS 2015)

  Whole-exome sequencing of 78 Gastric Adenocarcinomas and their matched normal samples.

  Esophagus and stomachOther published and consortium studiesSource code egcPubMed 1

• Gastric Cancer (OncoSG, 2018)

  Whole-genome sequencing of 147 gastric cancer tumors with matched normals. Courtesy of OncoSG (https://src.gisapps.org/OncoSG/).

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (Pfizer and UHK, Nat Genet 2014)

  Whole genome sequencing of 100 gastric cancer tumor-normal pairs from the University of Hong Kong and Pfizer.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (U Tokyo, Nat Genet 2014)

  Whole exome sequencing of 30 diffuse-type gastric adenocarcinoma samples (with matched normals) from the University of Tokyo.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (UHK, Nat Genet 2011)

  Exome sequencing of 22 gastric cancer samples with matched normals.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Esophageal Adenocarcinoma (TCGA, PanCancer Atlas)

  Esophageal Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratla…

  Esophagus and stomachTCGA PanCancer AtlasSource code escaPubMed 11

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