Testicular Germ Cell Tumors (TCGA, PanCancer Atlas)

Summary

Testicular Germ Cell Tumors (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code testis. EvidenceHelix groups it with germ cell and testis studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Testicular Germ Cell Tumors TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

tgct_tcga_pan_can_atlas_2018

Short name

Testicular germ cell (TCGA PanCan 2018)

Source cancer-type code

testis

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Germ Cell Tumors (MSK, J Clin Oncol 2016)

  Whole-exome and Targeted sequencing of 19 samples and Targeted sequencing of 161 samples from 180 Germ Cell Tumor patients.

  Germ cell and testisMSK studiesSource code gctPubMed 1

• Testicular Germ Cell Cancer (TCGA, Firehose Legacy)

  TCGA Testicular Germ Cell Cancer. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/TGCT/20160128/). Previously known as TCGA Provisional.

  Germ cell and testisTCGA Firehose LegacySource code nsgct

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