Kidney Renal Clear Cell Carcinoma (TCGA, PanCancer Atlas)

Summary

Kidney Renal Clear Cell Carcinoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code ccrcc. EvidenceHelix groups it with kidney and bladder studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Kidney Renal Clear Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 30643250, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

kirc_tcga_pan_can_atlas_2018

Short name

ccRCC (TCGA PanCan)

Source cancer-type code

ccrcc

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 30643250 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Clear Cell Renal Cell Carcinoma (DFCI, Science 2019)

  Whole-exome sequencing of metastatic clear cell renal carcinoma (ccRCC) from 35 tumor/normal pairs.

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

• Kidney Renal Clear Cell Carcinoma (BGI, Nat Genet 2012)

  Whole-exome sequencing of 10 ccRCC tumor/normal pairs and targeted sequencing of 88 clear cell carcinoma tumor/normal pairs. Generated by BGI-Shenzhen.

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

• Kidney Renal Clear Cell Carcinoma (IRC, Nat Genet 2014)

  Multi region exome sequencing of 10 clear cell renal cell carcinomas (ccRCCs)

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

• Kidney Renal Clear Cell Carcinoma (TCGA, Firehose Legacy)

  TCGA Kidney Renal Clear Cell Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/KIRC/20160128/). Previously known as TCGA Provisional.

  Kidney and bladderTCGA Firehose LegacySource code ccrcc

• Kidney Renal Clear Cell Carcinoma (TCGA, Nature 2013)

  Whole-exome sequencing in 417 of 446 clear cell renal cell carcinoma tumor/normal pairs.

  Kidney and bladderTCGA (other releases)Source code ccrccPubMed 1

• Renal Cell Carcinoma (St. James, Clin Cancer Res 2023)

  Targeted sequencing of 943 renal clear cell carcinoma samples and their matched normals.

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

• Renal Clear Cell Carcinoma (UTokyo, Nat Genet 2013)

  Whole exome and/or whole genome sequencing of 106 clear cell renal cell carcinoma tumor/normal pairs.

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

• Bladder Urothelial Carcinoma (TCGA, PanCancer Atlas)

  Bladder Urothelial Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancancera…

  Kidney and bladderTCGA PanCancer AtlasSource code blcaPubMed 11

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