Research reading room
Bladder Urothelial Carcinoma (TCGA, PanCancer Atlas)
Summary
Bladder Urothelial Carcinoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code blca. EvidenceHelix groups it with kidney and bladder studies and lists it in the TCGA PanCancer Atlas collection.
Study description
Bladder Urothelial Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).
Text as published in the source's study metadata.
Citation & PubMed
TCGA, Cell 2018
Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560
Source & licence
Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.
Source metadata
- Study identifier
- blca_tcga_pan_can_atlas_2018
- Short name
- Bladder (TCGA PanCan 2018)
- Source cancer-type code
- blca
- Reference genome
- not given
- Source access groups
- PUBLIC;PANCAN
- Original study
- View on cBioPortal
- Metadata file
- meta_study.txt at e1b75cd25b
- Database licence
- ODC Open Database License (ODbL) 1.0
Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.
Citations
TCGA, Cell 2018
- PubMed record 29625048 ↗
- PubMed record 29596782 ↗
- PubMed record 29622463 ↗
- PubMed record 29617662 ↗
- PubMed record 29625055 ↗
- PubMed record 29625050 ↗
- PubMed record 29617662 ↗
- PubMed record 32214244 ↗
- PubMed record 29625049 ↗
- PubMed record 29850653 ↗
- PubMed record 36334560 ↗
Citation counts are not part of the source metadata and are not shown.
Related studies
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Bladder Cancer (MSK, Eur Urol 2014)
Genomic Predictors of Survival in Patients with High-grade Urothelial Carcinoma of the Bladder. Targeted sequencing of 109 tumor samples (MSKCC, European Urology 2014).
Kidney and bladderMSK studiesSource code blcaPubMed 1 -
Bladder Cancer (MSK, J Clin Onco 2013)
Comprehensive profiling of 97 high-grade bladder tumors, including targeted sequencing of 15 cancer genes
Kidney and bladderMSK studiesSource code blcaPubMed 1 -
Bladder Cancer (MSK, Nat Genet 2016)
Whole exome and targeted sequencing of 34 plasmacytoid-variant (signet ring cell) tumors of the bladder
Kidney and bladderMSK studiesSource code blcaPubMed 1 -
Bladder Cancer (MSK/TCGA, 2020)
Whole-exome or targeted sequencing of 476 muscle-invasive bladder tumor/normal pairs via TCGA or MSK-IMPACT sequencing.
Kidney and bladderTCGA (other releases)Source code blcaPubMed 1 -
Bladder Cancer (TCGA, Cell 2017)
Whole-exome sequencing of 412 muscle-invasive bladder tumors and matched normal samples.
Kidney and bladderTCGA (other releases)Source code blcaPubMed 1 -
Bladder Urothelial Carcinoma (BGI, Nat Genet 2013)
Whole-exome and whole-genome sequencing of 99 bladder cancer tumor/normal pairs. Generated by BGI.
Kidney and bladderOther published and consortium studiesSource code blcaPubMed 1 -
Bladder Urothelial Carcinoma (DFCI/MSK, Cancer Discov 2014)
Whole exome sequencing of tumor/normal samples from 50 patients treated with cisplatin-based chemotherapy for muscle invasive urothelial carcinoma.
Kidney and bladderMSK studiesSource code blcaPubMed 1 -
Bladder Urothelial Carcinoma (TCGA, Firehose Legacy)
TCGA Bladder Urothelial Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/BLCA/20160128/). Previously known as TCGA Provisional.
Kidney and bladderTCGA Firehose LegacySource code blca