Colorectal Adenocarcinoma (TCGA, PanCancer Atlas)

Summary

Colorectal Adenocarcinoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code coadread. EvidenceHelix groups it with colorectal studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Colorectal Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 30643250, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

coadread_tcga_pan_can_atlas_2018

Short name

Colorectal (TCGA PanCan)

Source cancer-type code

coadread

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 30643250 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Colorectal Adenocarcinoma (DFCI, Cell Reports 2016)

  Whole-exome sequencing of 619 colorectal cancers with clinicopathologic annotations.

  ColorectalOther published and consortium studiesSource code coadreadPubMed 1

• Colorectal Adenocarcinoma (Genentech, Nature 2012)

  Whole-genome sequencing of 74 paired colon tumor-normal samples.

  ColorectalOther published and consortium studiesSource code coadreadPubMed 1

• Colorectal Adenocarcinoma (TCGA, Firehose Legacy)

  TCGA Colorectal Adenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/COADREAD/20160128/). Previously known as TCGA Provisional.

  ColorectalTCGA Firehose LegacySource code coadread

• Colorectal Adenocarcinoma (TCGA, Nature 2012)

  Whole exome sequencing in 224 of the 276 colorectal carcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) Colorectal Cancer project.

  ColorectalTCGA (other releases)Source code coadreadPubMed 1

• Colorectal Adenocarcinoma Triplets (MSK, Genome Biol 2014)

  Targeted sequencing of primary, metastatic, and normal tissues from 69 colorectal adenocarcinoma patients.

  ColorectalMSK studiesSource code coadreadPubMed 1

• Colorectal Cancer (CAS Shanghai, Cancer Cell 2020)

  Whole-exome sequencing of 146 colorectal tumor/normal pairs from a chinese cohort, covering 70 metastatic and 76 non-metastatic colorectal cancer patients.

  ColorectalOther published and consortium studiesSource code coadreadPubMed 1

• Colorectal Cancer (HTAN MSK, Nature 2025)

  Targeted genomic and single-cell RNA sequencing of normal colon, primary colorectal cancer, and matched metastatic samples from 29 patients.

  ColorectalMSK studiesSource code coadreadPubMed 1

• Colorectal Cancer (MSK, Cancer Discovery 2022)

  Targeted sequencing of patient-derived xenografts, cell lines, tumors and their matched normals from 22 colorectal samples via MSK-IMPACT.

  ColorectalMSK studiesSource code coadreadPubMed 1

Your notes

Notes and highlights stay in this browser only; they are not sent to EvidenceHelix.