Melanomas (TCGA, Cell 2015)

Summary

Melanomas (TCGA, Cell 2015) is a study catalogued by cBioPortal DataHub under the cancer-type code skcm. EvidenceHelix groups it with skin and eye studies and lists it in the TCGA (other releases) collection.

Study description

Whole-exome sequencing of 333 primary and/or metastatic melanomas.

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2015

Linked PubMed records: PMID 26091043

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

skcm_tcga_pub_2015

Short name

Mel (TCGA pub)

Source cancer-type code

skcm

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2015

• PubMed record 26091043 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Melanoma (Broad/Dana Farber, Nature 2012)

  Whole Genome Sequencing of 25 metastatic melanoma samples with matched normals

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Melanoma (MSK, NEJM 2014)

  Whole-exome sequencing of 64 pretreated (ipilimumab or tremelimumab) melanoma tumor-normal pairs.

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Metastatic Melanoma (DFCI, Science 2015)

  Whole-exome sequencing of 110 metastatic melanoma tumor-normal pairs.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Metastatic Melanoma (MSK, JCO Precis Oncol 2017)

  Targeted sequencing of pre-treatment 66 Melanoma tumor samples. PubMed (https://ascopubs.org/doi/full/10.1200/PO.16.00054)

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma (Broad, Cell 2012)

  Whole-exome sequencing of 121 melanoma samples with matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma (TCGA, Firehose Legacy)

  TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/SKCM/20160128/). Previously known as TCGA Provisional.

  Skin and eyeTCGA Firehose LegacySource code skcm

• Skin Cutaneous Melanoma (TCGA, PanCancer Atlas)

  Skin Cutaneous Melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/…

  Skin and eyeTCGA PanCancer AtlasSource code skcmPubMed 12

• Skin Cutaneous Melanoma (Yale, Nat Genet 2012)

  Exome sequencing of 147 melanoma samples with 99 matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

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