Nerve Sheath Tumors (Johns Hopkins, 2024)

Summary

Nerve Sheath Tumors (Johns Hopkins, 2024) is a study catalogued by cBioPortal DataHub under the cancer-type code nst. EvidenceHelix groups it with brain and nervous system studies.

Study description

Whole-exome sequencing of 134 nerve sheath tumor samples with their matched normals. The raw data is contributed by Johns Hopkins University researchers funded by the Neurofibromatosis Therapeutic Acceleration Program (NTAP). The reprocessing of the raw data is managed by the NF Open Science Initiative (NF Data Portal (https://nf.synapse.org/)). The original raw data was reprocessed with updated genome build and filtered to remove low confidence variant calls, and any common variants that had a gnomAD allele frequency (for any subpopulation) greater than or equal to 0.0005. (Recent preprint can be found here (https://www.biorxiv.org/content/10.1101/2024.01.23.576977v1)).

Text as published in the source's study metadata.

Citation & PubMed

Pollard et al. Sci Data 2020

Linked PubMed records: PMID 32561749

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

nst_nfosi_ntap

Short name

not given

Source cancer-type code

nst

Reference genome

hg38

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.

Citations

Pollard et al. Sci Data 2020

• PubMed record 32561749 ↗

Citation counts are not part of the source metadata and are not shown.

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