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Lung Squamous Cell Carcinoma (TCGA, Nature 2012)

cBioPortal DataHub · study lusc_tcga_pub · www.cbioportal.org/study/summary?id=lusc_tcga_pub

Study metadataOpen database (ODbL)PubMed 1TCGA (other releases)Approximately 1 min read

Table of Contents

1. Summary2. Study description3. Citation & PubMed4. Source & licence

Summary

Lung Squamous Cell Carcinoma (TCGA, Nature 2012) is a study catalogued by cBioPortal DataHub under the cancer-type code lusc. EvidenceHelix groups it with lung and pleura studies and lists it in the TCGA (other releases) collection.

This page is catalog metadata only: what the study is called and where to find it. It does not report findings, mutation frequencies or patient numbers, and it is not clinical guidance.

What this page is

Study description

Whole exome sequencing of 178 lung squamous cell carcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) (http://cancergenome.nih.gov/) Lung Squamous Cell Carcinoma project.

Text as published in the source's study metadata.

Citation & PubMed

Linked PubMed records: PMID 22960745

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier
lusc_tcga_pub
Short name
Lung squ (TCGA pub)
Source cancer-type code
lusc
Reference genome
not given
Source access groups
PUBLIC
Original study
View on cBioPortal
Metadata file
meta_study.txt at e1b75cd25b
Database licence
ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

  • PubMed record 22960745 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

  • Lung Squamous Cell Carcinoma (CPTAC, Cell 2021)

    Whole genome / whole exome sequencing and proteogenomic portrait of 108 prospectively collected, treatment-naive, primary LSCC tumors and 99 paired normal adjacent tissues. Generated by CPTAC.

    Lung and pleuraOther published and consortium studiesSource code luscPubMed 1
  • Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy)

    TCGA Lung Squamous Cell Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LUSC/20160128/). Previously known as TCGA Provisional.

    Lung and pleuraTCGA Firehose LegacySource code lusc
  • Lung Squamous Cell Carcinoma (TCGA, PanCancer Atlas)

    Lung Squamous Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancancera…

    Lung and pleuraTCGA PanCancer AtlasSource code luscPubMed 12
  • Lung Adenocarcinoma (TCGA, Nature 2014)

    Whole exome sequencing of 230 lung adenocarcinoma tumor/normal pairs. Raw data via the TCGA Data Portal (https://tcga-data.nci.nih.gov/docs/publications/luad_2014/).

    Lung and pleuraTCGA (other releases)Source code luadPubMed 1
  • Pan-Lung Cancer (TCGA, Nat Genet 2016)

    Whole-exome sequencing of 660 lung ADC and 484 lung SqCC tumor/normal pairs.

    Lung and pleuraTCGA (other releases)Source code nsclcPubMed 1
  • Atypical Small Cell Lung Cancer (MSK, Cancer Discov 2024)

    Targeted sequencing of 31 atypical small cell lung cancers lacking RB1 and TP53 co-inactivation and their matched normals via MSK-IMPACT, including structural variant analysis via whole-genome sequencing. This data is…

    Lung and pleuraMSK studiesSource code lungPubMed 1
  • Lung Adenocarcinoma (Broad, Cell 2012)

    Whole-exome and/or whole-genome sequencing of 183 lung adenocarcinomas and matched normal tissue pairs.

    Lung and pleuraOther published and consortium studiesSource code luadPubMed 1
  • Lung Adenocarcinoma (CAS, Cell 2020)

    Whole-exome sequencing of 103 lung adenocarcinoma cases and their matched normals in Chinese patients.

    Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

Your notes

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At a glance

Study ID
lusc_tcga_pub
Cancer family
Lung and pleura
Collection
TCGA (other releases)
Source code
lusc
PubMed links
1

Family and collection are EvidenceHelix groupings derived from the title; the source code is the source's own.

Related studies See all →

  • Lung Squamous Cell Carcinoma (CPTAC, Cell 2021)Other published and consortium studies
  • Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy)TCGA Firehose Legacy
  • Lung Squamous Cell Carcinoma (TCGA, PanCancer Atlas)TCGA PanCancer Atlas
  • Lung Adenocarcinoma (TCGA, Nature 2014)TCGA (other releases)

My notes & annotations (0)

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Original sources

  • Study on cBioPortal ↗
  • Source metadata file ↗
  • PubMed 22960745 ↗

Study metadata from cBioPortal DataHub (e1b75cd25b, synced 2026-10-31), available under the ODC Open Database License (ODbL) 1.0; attribution required. EvidenceLib is a research-education resource, not medical advice. Sources & licence