Head and Neck Squamous Cell Carcinoma (TCGA, PanCancer Atlas)

Summary

Head and Neck Squamous Cell Carcinoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code hnsc. EvidenceHelix groups it with head and neck studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Head and Neck Squamous Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 30643250, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

hnsc_tcga_pan_can_atlas_2018

Short name

Head & neck (TCGA PanCan)

Source cancer-type code

hnsc

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 30643250 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Head and Neck Squamous Cell Carcinoma (Broad, Science 2011)

  Whole-exome sequencing of 74 head and neck squamous cell carcinoma tumor/normal pairs.

  Head and neckOther published and consortium studiesSource code hnscPubMed 1

• Head and Neck Squamous Cell Carcinoma (Johns Hopkins, Science 2011)

  Whole exome sequencing of 32 head and neck squamous cell carcinoma tumor/normal sample pairs.

  Head and neckOther published and consortium studiesSource code hnscPubMed 1

• Head and Neck Squamous Cell Carcinoma (TCGA, Firehose Legacy)

  TCGA Head and Neck Squamous Cell Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/HNSC/20160128/). Previously known as TCGA Provisional.

  Head and neckTCGA Firehose LegacySource code hnsc

• Head and Neck Squamous Cell Carcinoma (TCGA, Nature 2015)

  Whole-exome sequencing and/or whole-genome sequencing of 279 head and neck squamous cell carcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) head and neck squamous cell carcinoma Project.

  Head and neckTCGA (other releases)Source code hnscPubMed 1

• Adenoid Cystic Carcinoma (FMI, Am J Surg Pathl. 2014)

  Targeted Sequencing of 28 metastatic Adenoid Cystic Carcinoma samples.

  Head and neckOther published and consortium studiesSource code acycPubMed 1

• Adenoid Cystic Carcinoma (JHU, Cancer Prev Res 2016)

  Whole-genome or whole-exome sequencing of 25 adenoid cystic carcinoma tumor/normal pairs.

  Head and neckOther published and consortium studiesSource code acycPubMed 1

• Adenoid Cystic Carcinoma (MDA, Clin Cancer Res 2015)

  WGS of 21 salivary ACCs and targeted molecular analyses of a validation set (81 patients).

  Head and neckOther published and consortium studiesSource code acycPubMed 1

• Adenoid Cystic Carcinoma (MSK, Nat Genet 2013)

  Whole-exome or whole-genome sequencing analysis of 60 ACC tumor/normal pairs

  Head and neckMSK studiesSource code acycPubMed 1

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