Research reading room
Glioma (MSK, Nature 2019)
Summary
Glioma (MSK, Nature 2019) is a study catalogued by cBioPortal DataHub under the cancer-type code difg. EvidenceHelix groups it with brain and nervous system studies.
Study description
Targeted Sequencing of CSF samples (91 samples with 86 matched normals) from 42 glioma patients.
Text as published in the source's study metadata.
Citation & PubMed
Miller et al. Nature 2019
Linked PubMed records: PMID 30675060
Source & licence
Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.
Source metadata
- Study identifier
- glioma_msk_2018
- Short name
- DIFG(MSK 2018)
- Source cancer-type code
- difg
- Reference genome
- not given
- Source access groups
- PUBLIC
- Original study
- View on cBioPortal
- Metadata file
- meta_study.txt at e1b75cd25b
- Database licence
- ODC Open Database License (ODbL) 1.0
Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.
Citations
Miller et al. Nature 2019
Citation counts are not part of the source metadata and are not shown.
Related studies
-
Anaplastic Oligodendroglioma and Anaplastic Oligoastrocytoma (MSK, Neuro Oncol 2017)
IMPACT sequencing of 22 Anaplastic Oligodendroglioma and Anaplastic Oligoastrocytomas.
Brain and nervous systemMSK studiesSource code difgPubMed 1 -
Glioma (MSK, Clin Cancer Res 2019)
Targeted sequencing on MSK-IMPACT and FMI Panels of 1004 samples (837 with matched normals) from 923 glioma patients.
Brain and nervous systemMSK studiesSource code difgPubMed 1 -
IDH-mutated Diffuse Glioma (MSK, Clin Cancer Res 2024)
Targeted sequencing of 73 IDH-mutated low-grade gliomas and their matched normal pairs via MSK-IMPACT. The data is available on Synapse (https://www.synapse.org/#!Synapse:syn52658621/wiki/624065).
Brain and nervous systemMSK studiesSource code difgPubMed 1 -
Brain Lower Grade Glioma (TCGA, Firehose Legacy)
TCGA Brain Lower Grade Glioma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LGG/20160128/). Previously known as TCGA Provisional.
Brain and nervous systemTCGA Firehose LegacySource code difg -
Brain Lower Grade Glioma (TCGA, PanCancer Atlas)
Brain Lower Grade Glioma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas…
Brain and nervous systemTCGA PanCancer AtlasSource code difgPubMed 12 -
Brain Tumor PDXs (Mayo Clinic, Clin Cancer Res 2020)
WES on a total of 106 PDXs and 80 PDXs have the matched germline (blood) samples sequenced. A total of 66 PDXs have RNASeq available
Brain and nervous systemOther published and consortium studiesSource code difgPubMed 1 -
Diffuse Glioma (GLASS Consortium, Nature 2019)
Whole genome or whole exome sequencing analysis of temporally separated diffuse glioma tumor/normal pairs from 222 adult patients.
Brain and nervous systemOther published and consortium studiesSource code difgPubMed 1 -
Diffuse Glioma (GLASS Consortium)
Whole genome or whole exome sequencing analysis of temporally separated diffuse glioma tumor/normal pairs from 329 adult patients. The data provided is based on the May 31, 2022 version and can be accessed at Synapse…
Brain and nervous systemOther published and consortium studiesSource code difgPubMed 2