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Cholangiocarcinoma (National Cancer Centre of Singapore, Nat Genet 2013)

cBioPortal DataHub · study chol_nccs_2013 · www.cbioportal.org/study/summary?id=chol_nccs_2013

Study metadataOpen database (ODbL)PubMed 1Other published and consortium studiesApproximately 1 min read

Table of Contents

1. Summary2. Study description3. Citation & PubMed4. Source & licence

Summary

Cholangiocarcinoma (National Cancer Centre of Singapore, Nat Genet 2013) is a study catalogued by cBioPortal DataHub under the cancer-type code chol. EvidenceHelix groups it with liver, bile duct and gallbladder studies.

This page is catalog metadata only: what the study is called and where to find it. It does not report findings, mutation frequencies or patient numbers, and it is not clinical guidance.

What this page is

Study description

Whole exome sequencing of 15 cholangiocarcinoma cases.

Text as published in the source's study metadata.

Citation & PubMed

Chan-on et al. Nat Genet 2013

Linked PubMed records: PMID 24185513

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier
chol_nccs_2013
Short name
Cholangiocarcinoma (NCCS)
Source cancer-type code
chol
Reference genome
not given
Source access groups
PUBLIC
Original study
View on cBioPortal
Metadata file
meta_study.txt at e1b75cd25b
Database licence
ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.

Citations

Chan-on et al. Nat Genet 2013

  • PubMed record 24185513 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

  • Cholangiocarcinoma (ICGC, Cancer Discov 2017)

    Whole-exome sequencing and Targeted/Exome sequencing of 489 Cholangiocarcinoma samples from 10 countries.

    Liver, bile duct and gallbladderOther published and consortium studiesSource code cholPubMed 1
  • Cholangiocarcinoma (National University of Singapore, Nat Genet 2012)

    Exome Sequencing for Opisthorchis viverrini-related cholangiocarcinoma in 8 O.viverrini-related tumors and matched normal tissue.

    Liver, bile duct and gallbladderOther published and consortium studiesSource code cholPubMed 1
  • Intrahepatic Cholangiocarcinoma (JHU, Nat Genet 2013)

    Exome sequencing of tumor/normal pairs from 32 intrahepatic cholangiocarcinoma cases and 8 gall bladder carcinoma cases.

    Liver, bile duct and gallbladderOther published and consortium studiesSource code cholPubMed 1
  • Cholangiocarcinoma (MSK, Clin Cancer Res 2018)

    Targeted sequencing (MSK-IMPACT) of 195 tumor samples (194 with matched normals) from 192 cholangiocarcinoma patients.

    Liver, bile duct and gallbladderMSK studiesSource code cholPubMed 1
  • Cholangiocarcinoma (TCGA, Firehose Legacy)

    TCGA Cholangiocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/CHOL/20160128/). Previously known as TCGA Provisional.

    Liver, bile duct and gallbladderTCGA Firehose LegacySource code chol
  • Cholangiocarcinoma (TCGA, PanCancer Atlas)

    Cholangiocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/panca…

    Liver, bile duct and gallbladderTCGA PanCancer AtlasSource code cholPubMed 11
  • Ampullary Carcinoma (Baylor College of Medicine, Cell Reports 2016)

    Exome sequencing analysis of 160 cancers arising in the periampullary region, 62 of these clearly arising from either the bile duct (n = 44) or the duodenum (n = 18) and 98 for which the epithelium of origin could not…

    Liver, bile duct and gallbladderOther published and consortium studiesSource code ampcaPubMed 1
  • Combined Hepatocellular and Intrahepatic Cholangiocarcinoma (Peking University, Cancer Cell 2019)

    Whole-exome sequencing of 121 combined hepatocellular and intrahepatic cholangiocarcinoma (cHCC-ICC) patients with matched normal pairs (whole-genome sequenced samples are not included here).

    Liver, bile duct and gallbladderOther published and consortium studiesSource code hccihchPubMed 1

Your notes

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At a glance

Study ID
chol_nccs_2013
Cancer family
Liver, bile duct and gallbladder
Collection
Other published and consortium studies
Source code
chol
PubMed links
1

Family and collection are EvidenceHelix groupings derived from the title; the source code is the source's own.

Related studies See all →

  • Cholangiocarcinoma (ICGC, Cancer Discov 2017)Other published and consortium studies
  • Cholangiocarcinoma (National University of Singapore, Nat Genet 2012)Other published and consortium studies
  • Intrahepatic Cholangiocarcinoma (JHU, Nat Genet 2013)Other published and consortium studies
  • Cholangiocarcinoma (MSK, Clin Cancer Res 2018)MSK studies

My notes & annotations (0)

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Original sources

  • Study on cBioPortal ↗
  • Source metadata file ↗
  • PubMed 24185513 ↗

Study metadata from cBioPortal DataHub (e1b75cd25b, synced 2026-10-31), available under the ODC Open Database License (ODbL) 1.0; attribution required. EvidenceLib is a research-education resource, not medical advice. Sources & licence