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Nephrocalcinosis

Metabolism and Endocrine Disease · NLM MeSH · updated 2026-11-04 · version 1

Citations verified against PubMedNot yet clinician-reviewed10 referencesApproximately 5 min read

A condition characterized by calcification of the renal tissue itself.

Table of Contents

1. Definition2. Research landscape3. Reading the evidence4. Open-access studies5. Key reviews6. References7. About this article

Definition and research guide

This page combines a MeSH definition, publication statistics and selected research abstracts. It is a starting point for reading the literature, not a medical textbook or a systematic evidence review.

Content available: 4 complete abstracts (957 words), 10 references. Full article text is not stored or reproduced here; follow the PMID, DOI or PMC links to read the original sources and their access terms.

Definition

A condition characterized by calcification of the renal tissue itself. It is usually seen in distal renal tubular acidosis with calcium deposition in the distal kidney tubules and the surrounding interstitium. Nephrocalcinosis causes renal insufficiency.

Definition: NLM Medical Subject Headings (MeSH) scope note (Public domain (U.S. National Library of Medicine); attribution requested). View the MeSH record.

Also known as: Nephrocalcinoses.

Where it fits in the MeSH classification

Broader topics
Kidney Diseases; Calcinosis

Related concepts

  • Renal Tubular Acidosis
  • Distal Kidney Tubules
  • Renal Insufficiency

Research landscape

PubMed indexes 2,370 records tagged with the MeSH heading “Nephrocalcinosis” (counts retrieved 2026-10-31). 306 of them (12.9%) were published from 2020 onward, and the busiest period so far is through 1999 with 1,282 records.

Reviews account for 228 records (9.6%) and meta-analyses for 3. Randomized controlled trials number 19 (0.8%) as a share of all records on the topic. Randomized trials make up only a small share of this literature, so much of what is known comes from laboratory, observational or descriptive work.

PubMed records by publication periodthrough 1999: 1,282 records; 2000-2009: 300 records; 2010-2019: 482 records; 2020 onward: 306 records1,282through 19993002000-20094822010-20193062020 onward
Records in PubMed indexed with this heading, by publication period. Real counts from NCBI E-utilities; the final period covers only part of the current year. Volume reflects how much has been published, not how strong the evidence is.
Show the data
PeriodRecords
through 19991,282
2000-2009300
2010-2019482
2020 onward306
Share of records by publication typeReviews: 9.6 percent; Meta-analyses: 0.1 percent; Randomized controlled trials: 0.8 percentReviews9.6% (228)Meta-analyses0.1% (3)Randomized controlled trials0.8% (19)
Share of all PubMed records on this heading that carry each publication type. Types overlap with other records, so the shares do not sum to 100%.
Publication-type chart data
Publication types among 2,370 PubMed records
TypeRecordsShare
Reviews2289.6%
Meta-analyses30.1%
Randomized controlled trials190.8%

Method: PubMed query "Nephrocalcinosis"[MeSH Terms] with publication-type and date filters, retrieved 2026-10-31.

Reading the evidence in metabolism and endocrine disease

Studies of diabetes, obesity and hormone disorders often follow blood tests such as glucose, HbA1c or hormone levels, which are stand-ins for outcomes that matter more, such as complications. Lifestyle and diet research is largely observational, and weight and diabetes trials can differ in how long people were followed. Nothing on this page is advice about medicines, insulin or diet; talk to a qualified clinician about your own situation. Check whether the outcome was a lab value or a clinical event, and the type and duration of the condition studied.

Evidence from open-access studies

These open-access studies come from PubMed’s best-match results for this heading (papers whose main topic it is), ranked here by citation count, with one recent addition. Each abstract is reproduced in full under its recorded open licence so that you can read the authors’ own words. They illustrate the literature; they are not a systematic summary of it. Citation counts measure attention, not reliability or clinical benefit.

Study comparison — selected abstracts, not a systematic review
Study / authorsYearSource label / designEurope PMC citationsLicence / source
Hereditary hypophosphatemia in Norway: a retrospective population-based study of genotypes, phenotypes, and treatment complications
Rafaelsen S, Johansson S, Ræder H, Bjerknes R
2016Research article
Design not recorded in structured metadata
130cc by
PMID 26543054 · DOI · PMC4674593
Genetic causes of hypomagnesemia, a clinical overview
Viering DHHM, de Baaij JHF, Walsh SB, Kleta R, Bockenhauer D
2017Review article
Design not recorded in structured metadata
116cc by
PMID 27234911 · DOI · PMC5440500
Sulforaphane elicts dual therapeutic effects on Renal Inflammatory Injury and crystal deposition in Calcium Oxalate Nephrocalcinosis
Liu H, Yang X, Tang K, Ye T, Duan C, Lv P, et al.
2020Research article
Design not recorded in structured metadata
71cc by
PMID 32641994 · DOI · PMC7330860
Genetic causes of nephrolithiasis and nephrocalcinosis in a pediatric population in Saudi Arabia
Alsubaie H, Alluhaybi B, Zaidan F, Rahbeeni Z, Alsabban E, Alshareef T, et al.
2026Research article
Design not recorded in structured metadata
0cc by
PMID 41203986 · DOI · PMC12852217

Hereditary hypophosphatemia in Norway: a retrospective population-based study of genotypes, phenotypes, and treatment complications [1]

Research article Rafaelsen S, Johansson S, Ræder H, Bjerknes R · · 2016 · cited 130 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
ObjectiveHereditary hypophosphatemias (HH) are rare monogenic conditions characterized by decreased renal tubular phosphate reabsorption.
Closing excerpt
The prevalence of XLHR seems to be lower in Norwegian children than reported earlier.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (260 words)

ObjectiveHereditary hypophosphatemias (HH) are rare monogenic conditions characterized by decreased renal tubular phosphate reabsorption. The aim of this study was to explore the prevalence, genotypes, phenotypic spectrum, treatment response, and complications of treatment in the Norwegian population of children with HH.DesignRetrospective national cohort study.MethodsSanger sequencing and multiplex ligand-dependent probe amplification analysis of PHEX and Sanger sequencing of FGF23, DMP1, ENPP1KL, and FAM20C were performed to assess genotype in patients with HH with or without rickets in all pediatric hospital departments across Norway. Patients with hypercalcuria were screened for SLC34A3 mutations. In one family, exome sequencing was performed. Information from the patients' medical records was collected for the evaluation of phenotype.ResultsTwety-eight patients with HH (18 females and ten males) from 19 different families were identified. X-linked dominant hypophosphatemic rickets (XLHR) was confirmed in 21 children from 13 families. The total number of inhabitants in Norway aged 18 or below by 1st January 2010 was 1,109,156, giving an XLHR prevalence of ∼1 in 60,000 Norwegian children. FAM20C mutations were found in two brothers and SLC34A3 mutations in one patient. In XLHR, growth was compromised in spite of treatment with oral phosphate and active vitamin D compounds, with males tending to be more affected than females. Nephrocalcinosis tended to be slightly more common in patients starting treatment before 1 year of age, and was associated with higher average treatment doses of phosphate. However, none of these differences reached statistical significance.ConclusionsWe present the first national cohort of HH in children. The prevalence of XLHR seems to be lower in Norwegian children than reported earlier.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 26543054 · DOI · PMC4674593

Genetic causes of hypomagnesemia, a clinical overview [2]

Review article Viering DHHM, de Baaij JHF, Walsh SB, Kleta R, Bockenhauer D · · 2017 · cited 116 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
Magnesium is essential to the proper functioning of numerous cellular processes.
Closing excerpt
In this review, we discuss general mechanisms and symptoms of genetic causes of hypomagnesemia as well as the specific molecular mechanisms and clinical phenotypes associated with each syndrome.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (197 words)

Magnesium is essential to the proper functioning of numerous cellular processes. Magnesium ion (Mg2+) deficits, as reflected in hypomagnesemia, can cause neuromuscular irritability, seizures and cardiac arrhythmias. With normal Mg2+ intake, homeostasis is maintained primarily through the regulated reabsorption of Mg2+ by the thick ascending limb of Henle's loop and distal convoluted tubule of the kidney. Inadequate reabsorption results in renal Mg2+ wasting, as evidenced by an inappropriately high fractional Mg2+ excretion. Familial renal Mg2+ wasting is suggestive of a genetic cause, and subsequent studies in these hypomagnesemic families have revealed over a dozen genes directly or indirectly involved in Mg2+ transport. Those can be classified into four groups: hypercalciuric hypomagnesemias (encompassing mutations in CLDN16, CLDN19, CASR, CLCNKB), Gitelman-like hypomagnesemias (CLCNKB, SLC12A3, BSND, KCNJ10, FYXD2, HNF1B, PCBD1), mitochondrial hypomagnesemias (SARS2, MT-TI, Kearns-Sayre syndrome) and other hypomagnesemias (TRPM6, CNMM2, EGF, EGFR, KCNA1, FAM111A). Although identification of these genes has not yet changed treatment, which remains Mg2+ supplementation, it has contributed enormously to our understanding of Mg2+ transport and renal function. In this review, we discuss general mechanisms and symptoms of genetic causes of hypomagnesemia as well as the specific molecular mechanisms and clinical phenotypes associated with each syndrome.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 27234911 · DOI · PMC5440500

Sulforaphane elicts dual therapeutic effects on Renal Inflammatory Injury and crystal deposition in Calcium Oxalate Nephrocalcinosis [3]

Research article Liu H, Yang X, Tang K, Ye T, Duan C, Lv P, et al. · · 2020 · cited 71 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
Intrarenal calcium oxalate (CaOx) crystals induce renal tubular epithelial cells (TECs) injury and inflammation, which involve Toll-like receptor 4 (TLR4)/interferon regulatory factor 1 (IRF1) signaling.
Closing excerpt
Conclusions: The results suggested that sulforaphane might promote M2Mϕ polarization and inhibit CaOx nephrocalcinosis-induced inflammatory injury to renal tubular epithelial cells via the Nrf2-miR-93-TLR4/IRF1 pathway in vitro and in vivo.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (276 words)

Intrarenal calcium oxalate (CaOx) crystals induce renal tubular epithelial cells (TECs) injury and inflammation, which involve Toll-like receptor 4 (TLR4)/interferon regulatory factor 1 (IRF1) signaling. Additionally, infiltrating macrophages (Mϕs) might influence intrarenal CaOx crystals and CaOx-induced renal injury. Although the roles of nuclear factor erythroid 2-related factor 2 (Nrf2) in regulating inflammation and macrophage polarization are well characterized, its potential mechanisms in regulating CaOx nephrocalcinosis remain undefined. Methods: We used a Gene Expression Omnibus dataset to analyze gene-expression profiles. Luciferase reporter, western blot, quantitative polymerase chain reaction, immunofluorescence staining, fluorescence in situ hybridization, positron emission tomography computed tomography imaging, flow cytometry, and chromatin immunoprecipitation assays were employed to study the mechanism of miR-93-TLR4/IRF1 regulation by Nrf2. Anti-inflammatory activity and regulation of macrophage polarization by Nrf2 were investigated in vitro and in vivo. Results: We found that stone-mediated kidney inflammation significantly affected stone growth, and that sulforaphane attenuated CaOx nephrocalcinosis-induced kidney injury and renal CaOx crystals deposition. Additionally, Nrf2 levels significantly increased and negatively correlated with TLR4 and IRF1 levels in a mouse model of CaOx nephrocalcinosis following sulforaphane treatment. Moreover, Nrf2 suppressed TLR4 and IRF1 levels and decreased M1-macrophage polarization which induced by supernatants from COM-stimulated TECs in vitro. In terms of mechanism, transcription factor analyses, microRNA microarray, and chromatin immunoprecipitation assays showed that Nrf2 exhibited positive transcriptional activation of miR-93-5p. In addition, Luciferase reporter, qRT-PCR, and western blot validated that miR-93-5p targets TLR4 and IRF1 mRNA. Furthermore, suppressed miR-93-5p expression partially reversed Nrf2-dependent TLR4/IRF1 downregulation. Conclusions: The results suggested that sulforaphane might promote M2Mϕ polarization and inhibit CaOx nephrocalcinosis-induced inflammatory injury to renal tubular epithelial cells via the Nrf2-miR-93-TLR4/IRF1 pathway in vitro and in vivo.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 32641994 · DOI · PMC7330860

Genetic causes of nephrolithiasis and nephrocalcinosis in a pediatric population in Saudi Arabia [4]

Research article Alsubaie H, Alluhaybi B, Zaidan F, Rahbeeni Z, Alsabban E, Alshareef T, et al. · · 2026

Abstract reading summary — source excerpts
Opening excerpt
BackgroundNephrolithiasis (NL) and nephrocalcinosis (NC) are common, recurrent conditions globally.
Closing excerpt
We recommend adding MOCS1 to the list of genes associated with monogenic NL/NC.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (224 words)

BackgroundNephrolithiasis (NL) and nephrocalcinosis (NC) are common, recurrent conditions globally. While monogenic causes are increasingly recognized, data on their prevalence and spectrum remain limited in Saudi pediatric populations.MethodsThis retrospective cross-sectional study was conducted in our tertiary care center from January 2008 to April 2023. Pediatric patients (0-18 years) with radiologically confirmed NL/NC who underwent genetic testing were included. Clinical, biochemical, radiological, and genetic data were analyzed. Genetic variants were classified using ACMG criteria, and segregation analysis was performed when available.ResultsOf 186 pediatric patients diagnosed with NL/NC, 54 (29.03%) underwent genetic testing. Median age at diagnosis was 3 months [IQR: 3-60], with median follow-up 56 months [IQR: 24-108]. Genetic mutations related to NL/NC were identified in 35/54 patients (64.81%), most commonly in CLDN16 (28.57%), SLC2A2 (17.14%), AGXT (11.43%), and SLC12A1 (8.57%). Thirteen novel variants were identified, with eleven linked to NL/NC phenotypes. Eight patients (14.81%) developed kidney failure requiring kidney replacement therapy; CLDN16 was significantly associated with kidney failure and transplant (P = 0.003), and AGXT with liver transplant (P ConclusionMonogenic causes were identified in 35 of 54 (64.81%) Saudi pediatric patients with NL/NC who underwent genetic testing, a prevalence higher than reported internationally, likely due to the high consanguinity rate. Our findings underscore the importance of genetic testing in early-onset NL/NC. We recommend adding MOCS1 to the list of genes associated with monogenic NL/NC.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 41203986 · DOI · PMC12852217

Key reviews and meta-analyses

The most cited review-type papers among PubMed’s best-match results for this heading, listed with bibliographic details only. Follow the links for the full text and access terms.

  • Research article The genetics of kidney stone disease and nephrocalcinosis [5]
    Singh P, Harris PC, Sas DJ, Lieske JC · Nat Rev Nephrol · 2022 · cited 194 times (Europe PMC)
  • Research article Hereditary causes of kidney stones and chronic kidney disease [6]
    Edvardsson VO, Goldfarb DS, Lieske JC, Beara-Lasic L, Anglani F, Milliner DS, et al. · Pediatr Nephrol · 2013 · cited 186 times (Europe PMC)
  • Research article The ClC-5 chloride channel knock-out mouse - an animal model for Dent's disease [7]
    Günther W, Piwon N, Jentsch TJ · Pflugers Arch · 2003 · cited 144 times (Europe PMC)
  • Research article Mutations in SLC34A3/NPT2c are associated with kidney stones and nephrocalcinosis [8]
    Dasgupta D, Wee MJ, Reyes M, Li Y, Simm PJ, Sharma A, et al. · J Am Soc Nephrol · 2014 · cited 119 times (Europe PMC)
  • Research article Diagnostic examination of the child with urolithiasis or nephrocalcinosis [9]
    Hoppe B, Kemper MJ · Pediatr Nephrol · 2010 · cited 106 times (Europe PMC)
  • Research article PRIMARY HYPEROXALURIA [10]
    HOCKADAY TD, CLAYTON JE, FREDERICK EW, SMITH LH · Medicine (Baltimore) · 1964 · cited 97 times (Europe PMC)

References

  1. Rafaelsen S, Johansson S, Ræder H, Bjerknes R. Hereditary hypophosphatemia in Norway: a retrospective population-based study of genotypes, phenotypes, and treatment complications. . 2016. PMID 26543054 · DOI · PMC4674593
  2. Viering DHHM, de Baaij JHF, Walsh SB, Kleta R, Bockenhauer D. Genetic causes of hypomagnesemia, a clinical overview. . 2017. PMID 27234911 · DOI · PMC5440500
  3. Liu H, Yang X, Tang K, Ye T, Duan C, Lv P, et al.. Sulforaphane elicts dual therapeutic effects on Renal Inflammatory Injury and crystal deposition in Calcium Oxalate Nephrocalcinosis. . 2020. PMID 32641994 · DOI · PMC7330860
  4. Alsubaie H, Alluhaybi B, Zaidan F, Rahbeeni Z, Alsabban E, Alshareef T, et al.. Genetic causes of nephrolithiasis and nephrocalcinosis in a pediatric population in Saudi Arabia. . 2026. PMID 41203986 · DOI · PMC12852217
  5. Singh P, Harris PC, Sas DJ, Lieske JC. The genetics of kidney stone disease and nephrocalcinosis. Nat Rev Nephrol. 2022. PMID 34907378 · DOI
  6. Edvardsson VO, Goldfarb DS, Lieske JC, Beara-Lasic L, Anglani F, Milliner DS, et al.. Hereditary causes of kidney stones and chronic kidney disease. Pediatr Nephrol. 2013. PMID 23334384 · DOI · PMC4138059
  7. Günther W, Piwon N, Jentsch TJ. The ClC-5 chloride channel knock-out mouse - an animal model for Dent's disease. Pflugers Arch. 2003. PMID 12548389 · DOI
  8. Dasgupta D, Wee MJ, Reyes M, Li Y, Simm PJ, Sharma A, et al.. Mutations in SLC34A3/NPT2c are associated with kidney stones and nephrocalcinosis. J Am Soc Nephrol. 2014. PMID 24700880 · DOI · PMC4178443
  9. Hoppe B, Kemper MJ. Diagnostic examination of the child with urolithiasis or nephrocalcinosis. Pediatr Nephrol. 2010. PMID 19104842 · DOI · PMC2810372
  10. HOCKADAY TD, CLAYTON JE, FREDERICK EW, SMITH LH. PRIMARY HYPEROXALURIA. Medicine (Baltimore). 1964. PMID 14170789 · DOI

About this article

Sources
NLM Medical Subject Headings (definition, synonyms); NCBI PubMed (counts, identifiers); Europe PMC (open-access abstracts and citation counts).
Verification
Every reference was resolved against PubMed on 2026-11-04; title, year and DOI matched.
Review state
automated source verified; no human expert review has been recorded yet.
Version
1, last updated 2026-11-04.

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At a glance

2,370
PubMed records on this heading
13%
published since 2020
228
review articles
19
randomized trials
10
verified references below

Counts come from PubMed on 2026-10-31; they show how much has been written, not how strong the evidence is.

Related topics See all →

  • Chronic Kidney Disease-Mineral and Bone DisorderMetabolism and Endocrine Disease
  • Acute Kidney InjuryKidney, Urology and Women's Health
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  • Fanconi SyndromeRare and Inherited Diseases
  • UremiaKidney, Urology and Women's Health

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