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Clonal Anergy

Immunology · NLM MeSH · updated 2026-10-29 · version 1

Citations verified against PubMedNot yet clinician-reviewed10 referencesApproximately 5 min read

Functional inactivation of T- or B-lymphocytes rendering them incapable of eliciting an immune response to antigen.

Table of Contents

1. Definition2. Research landscape3. Reading the evidence4. Open-access studies5. Key reviews6. References7. About this article

Definition and research guide

This page combines a MeSH definition, publication statistics and selected research abstracts. It is a starting point for reading the literature, not a medical textbook or a systematic evidence review.

Content available: 4 complete abstracts (967 words), 10 references. Full article text is not stored or reproduced here; follow the PMID, DOI or PMC links to read the original sources and their access terms.

Definition

Functional inactivation of T- or B-lymphocytes rendering them incapable of eliciting an immune response to antigen. This occurs through different mechanisms in the two kinds of lymphocytes and can contribute to self tolerance.

Definition: NLM Medical Subject Headings (MeSH) scope note (Public domain (U.S. National Library of Medicine); attribution requested). View the MeSH record.

Also known as: Anergies, Clonal; Anergy, Clonal; Clonal Anergies.

Where it fits in the MeSH classification

Broader topics
Immune Tolerance

Related concepts

  • Self Tolerance

Research landscape

PubMed indexes 1,633 records tagged with the MeSH heading “Clonal Anergy” (counts retrieved 2026-10-29). 78 of them (4.8%) were published from 2020 onward, and the busiest period so far is 2000-2009 with 726 records.

Reviews account for 307 records (18.8%) and meta-analyses for 0. Randomized controlled trials number 2 (0.1%) as a share of all records on the topic. Randomized trials make up only a small share of this literature, so much of what is known comes from laboratory, observational or descriptive work.

PubMed records by publication periodthrough 1999: 470 records; 2000-2009: 726 records; 2010-2019: 359 records; 2020 onward: 78 records470through 19997262000-20093592010-2019782020 onward
Records in PubMed indexed with this heading, by publication period. Real counts from NCBI E-utilities; the final period covers only part of the current year. Volume reflects how much has been published, not how strong the evidence is.
Show the data
PeriodRecords
through 1999470
2000-2009726
2010-2019359
2020 onward78
Share of records by publication typeReviews: 18.8 percent; Meta-analyses: 0.0 percent; Randomized controlled trials: 0.1 percentReviews18.8% (307)Meta-analyses0.0% (0)Randomized controlled trials0.1% (2)
Share of all PubMed records on this heading that carry each publication type. Types overlap with other records, so the shares do not sum to 100%.
Publication-type chart data
Publication types among 1,633 PubMed records
TypeRecordsShare
Reviews30718.8%
Meta-analyses00.0%
Randomized controlled trials20.1%

Method: PubMed query "Clonal Anergy"[MeSH Terms] with publication-type and date filters, retrieved 2026-10-29.

Reading the evidence in immunology

Immune responses are studied in model organisms, in cells from donors and in patients, and the same pathway can behave differently across these settings. Mouse immune systems differ from human ones in important ways, and blood measurements may not reflect what happens in tissues. Clinical conclusions about immune-mediated disease or immunotherapy come mainly from controlled trials and long-term cohorts. Check the species and tissue studied, whether markers were linked to outcomes patients notice, and the follow-up time.

Evidence from open-access studies

These open-access studies come from PubMed’s best-match results for this heading (papers whose main topic it is), ranked here by citation count, with one recent addition. Each abstract is reproduced in full under its recorded open licence so that you can read the authors’ own words. They illustrate the literature; they are not a systematic summary of it. Citation counts measure attention, not reliability or clinical benefit.

Study comparison — selected abstracts, not a systematic review
Study / authorsYearSource label / designEurope PMC citationsLicence / source
Bone marrow central memory and memory stem T-cell exhaustion in AML patients relapsing after HSCT
Noviello M, Manfredi F, Ruggiero E, Perini T, Oliveira G, Cortesi F, et al.
2019Research article
Design not recorded in structured metadata
160cc by
PMID 30911002 · DOI · PMC6434052
MAIT cells launch a rapid, robust and distinct hyperinflammatory response to bacterial superantigens and quickly acquire an anergic phenotype that impedes their cognate antimicrobial function: Defining a novel mechanism of superantigen-induced immunopathology and immunosuppression
Shaler CR, Choi J, Rudak PT, Memarnejadian A, Szabo PA, Tun-Abraham ME, et al.
2017Research article
Design not recorded in structured metadata
138cc by
PMID 28632753 · DOI · PMC5478099
Induction of anergic or regulatory tumor-specific CD4+ T cells in the tumor-draining lymph node
Alonso R, Flament H, Lemoine S, Sedlik C, Bottasso E, Péguillet I, et al.
2018Research article
Design not recorded in structured metadata
98cc by
PMID 29844317 · DOI · PMC5974295
Evidence of endothelial anergy and T-cell exclusion in microsatellite stable colorectal liver metastases revealed through human hemi-liver perfusion and spatial transcriptomics
Wan PK, Cheng R, Johnson D, Lee C, Wu S, Mian A, et al.
2026Research article
Design not recorded in structured metadata
0cc by
PMID 42477793 · DOI · PMC13673828

Bone marrow central memory and memory stem T-cell exhaustion in AML patients relapsing after HSCT [1]

Research article Noviello M, Manfredi F, Ruggiero E, Perini T, Oliveira G, Cortesi F, et al. · · 2019 · cited 160 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
The major cause of death after allogeneic Hematopoietic Stem Cell Transplantation (HSCT) for acute myeloid leukemia (AML) is disease relapse.
Closing excerpt
These results highlight a wide, though reversible, immunological dysfunction in the BM of AML patients relapsing after HSCT and suggest new therapeutic opportunities for the disease.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (150 words)

The major cause of death after allogeneic Hematopoietic Stem Cell Transplantation (HSCT) for acute myeloid leukemia (AML) is disease relapse. We investigated the expression of Inhibitory Receptors (IR; PD-1/CTLA-4/TIM-3/LAG-3/2B4/KLRG1/GITR) on T cells infiltrating the bone marrow (BM) of 32 AML patients relapsing (median 251 days) or maintaining complete remission (CR; median 1 year) after HSCT. A higher proportion of early-differentiated Memory Stem (TSCM) and Central Memory BM-T cells express multiple IR in relapsing patients than in CR patients. Exhausted BM-T cells at relapse display a restricted TCR repertoire, impaired effector functions and leukemia-reactive specificities. In 57 patients, early detection of severely exhausted (PD-1+Eomes+T-bet-) BM-TSCM predicts relapse. Accordingly, leukemia-specific T cells in patients prone to relapse display exhaustion markers, absent in patients maintaining long-term CR. These results highlight a wide, though reversible, immunological dysfunction in the BM of AML patients relapsing after HSCT and suggest new therapeutic opportunities for the disease.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 30911002 · DOI · PMC6434052

MAIT cells launch a rapid, robust and distinct hyperinflammatory response to bacterial superantigens and quickly acquire an anergic phenotype that impedes their cognate antimicrobial function: Defining a novel mechanism of superantigen-induced immunopathology and immunosuppression [2]

Research article Shaler CR, Choi J, Rudak PT, Memarnejadian A, Szabo PA, Tun-Abraham ME, et al. · · 2017 · cited 138 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
Superantigens (SAgs) are potent exotoxins secreted by Staphylococcus aureus and Streptococcus pyogenes.
Closing excerpt
MAIT cells may therefore provide an attractive therapeutic target for the management of both early and late phases of severe SAg-mediated illnesses.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (409 words)

Superantigens (SAgs) are potent exotoxins secreted by Staphylococcus aureus and Streptococcus pyogenes. They target a large fraction of T cell pools to set in motion a "cytokine storm" with severe and sometimes life-threatening consequences typically encountered in toxic shock syndrome (TSS). Given the rapidity with which TSS develops, designing timely and truly targeted therapies for this syndrome requires identification of key mediators of the cytokine storm's initial wave. Equally important, early host responses to SAgs can be accompanied or followed by a state of immunosuppression, which in turn jeopardizes the host's ability to combat and clear infections. Unlike in mouse models, the mechanisms underlying SAg-associated immunosuppression in humans are ill-defined. In this work, we have identified a population of innate-like T cells, called mucosa-associated invariant T (MAIT) cells, as the most powerful source of pro-inflammatory cytokines after exposure to SAgs. We have utilized primary human peripheral blood and hepatic mononuclear cells, mouse MAIT hybridoma lines, HLA-DR4-transgenic mice, MAIThighHLA-DR4+ bone marrow chimeras, and humanized NOD-scid IL-2Rγnull mice to demonstrate for the first time that: i) mouse and human MAIT cells are hyperresponsive to SAgs, typified by staphylococcal enterotoxin B (SEB); ii) the human MAIT cell response to SEB is rapid and far greater in magnitude than that launched by unfractionated conventional T, invariant natural killer T (iNKT) or γδ T cells, and is characterized by production of interferon (IFN)-γ, tumor necrosis factor (TNF)-α and interleukin (IL)-2, but not IL-17A; iii) high-affinity MHC class II interaction with SAgs, but not MHC-related protein 1 (MR1) participation, is required for MAIT cell activation; iv) MAIT cell responses to SEB can occur in a T cell receptor (TCR) Vβ-specific manner but are largely contributed by IL-12 and IL-18; v) as MAIT cells are primed by SAgs, they also begin to develop a molecular signature consistent with exhaustion and failure to participate in antimicrobial defense. Accordingly, they upregulate lymphocyte-activation gene 3 (LAG-3), T cell immunoglobulin and mucin-3 (TIM-3), and/or programmed cell death-1 (PD-1), and acquire an anergic phenotype that interferes with their cognate function against Klebsiella pneumoniae and Escherichia coli; vi) MAIT cell hyperactivation and anergy co-utilize a signaling pathway that is governed by p38 and MEK1/2. Collectively, our findings demonstrate a pathogenic, rather than protective, role for MAIT cells during infection. Furthermore, we propose a novel mechanism of SAg-associated immunosuppression in humans. MAIT cells may therefore provide an attractive therapeutic target for the management of both early and late phases of severe SAg-mediated illnesses.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 28632753 · DOI · PMC5478099

Induction of anergic or regulatory tumor-specific CD4+ T cells in the tumor-draining lymph node [3]

Research article Alonso R, Flament H, Lemoine S, Sedlik C, Bottasso E, Péguillet I, et al. · · 2018 · cited 98 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
CD4+ T cell antitumor responses have mostly been studied in transplanted tumors expressing secreted model antigens (Ags), while most mutated proteins in human cancers are not secreted.
Closing excerpt
Thus, tumors may enforce a dominant inhibition of the anti-tumor CD4 response in the TdLN by recapitulating peripheral self-tolerance mechanisms.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (146 words)

CD4+ T cell antitumor responses have mostly been studied in transplanted tumors expressing secreted model antigens (Ags), while most mutated proteins in human cancers are not secreted. The fate of Ag-specific CD4+ T cells recognizing a cytoplasmic Ag in mice bearing autochthonous tumors is still unclear. Here we show, using a genetically engineered lung adenocarcinoma mouse model, that naive tumor-specific CD4+ T cells are activated and proliferate in the tumor-draining lymph node (TdLN) but do not differentiate into effectors or accumulate in tumors. Instead, these CD4+ T cells are driven toward anergy or peripherally-induced Treg (pTreg) differentiation, from the early stage of tumor development. This bias toward immune suppression is restricted to the TdLN, and is maintained by Tregs enriched in the tumor Ag-specific cell population. Thus, tumors may enforce a dominant inhibition of the anti-tumor CD4 response in the TdLN by recapitulating peripheral self-tolerance mechanisms.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 29844317 · DOI · PMC5974295

Evidence of endothelial anergy and T-cell exclusion in microsatellite stable colorectal liver metastases revealed through human hemi-liver perfusion and spatial transcriptomics [4]

Research article Wan PK, Cheng R, Johnson D, Lee C, Wu S, Mian A, et al. · · 2026

Abstract reading summary — source excerpts
Opening excerpt
BackgroundColorectal liver metastasis (CRLM) is the terminal stage of colorectal cancer and remains largely resistant to immunotherapeutics, yet the underlying immune escape mechanisms remain poorly understood.
Closing excerpt
Further mechanistic work is needed to validate these findings and guide the development of novel immunotherapeutics.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (262 words)

BackgroundColorectal liver metastasis (CRLM) is the terminal stage of colorectal cancer and remains largely resistant to immunotherapeutics, yet the underlying immune escape mechanisms remain poorly understood. Through novel observational methods focused on human living and fixed tissue, we profiled the spatial and molecular features of microsatellite stable (MSS) CRLM and the surrounding liver microenvironment.MethodsFirst, we re-purposed normothermic hepatic machine perfusion as a preclinical model of MSS CRLM, enabling delivery of labelled T-cells through physiological vascular routes into living, tumour-bearing human livers. Second, to dissect the liver microenvironment, we spatially map the transcriptomes of MSS CRLM and adjacent liver at single-cell resolution across ~ 1.9 million cells, and perform multiplexed immunofluorescence applying a19-marker panel to a validation cohort.ResultsWhilst T-cells readily extravasated within the peri-tumoural liver, they failed to extravasate into MSS CRLM. Spatial analyses revealed a progressive shift in endothelial phenotypes across regions: from a non-inflamed state in normal liver, to a highly inflamed, peri-tumoural endothelium, and finally to an anergic, angiogenic endothelial population within CRLM characterised by reduced expression of adhesion molecules required for T-cell extravasation. CD4 T-cells that extravasate in the peri-tumoural liver are TCR-reactive yet exhausted, whereas CD4 T-cells within CRLM show stress responses, impaired cytokine gene expression and reduced TCR reactivity, residing within hypoxic niches. These divergent CD4 phenotypes are associated with distinct fibroblast-myeloid niches across peri-tumoural and tumour regions.ConclusionBased on these observations, MSS CRLM impair T-cell extravasation and simultaneously drive intra-tumoural endothelial anergy, peri-tumoural T-cell exhaustion and an intra-tumoural T-cell stress response. Further mechanistic work is needed to validate these findings and guide the development of novel immunotherapeutics.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 42477793 · DOI · PMC13673828

Key reviews and meta-analyses

The most cited review-type papers among PubMed’s best-match results for this heading, listed with bibliographic details only. Follow the links for the full text and access terms.

  • Research article T Cell Dysfunction in Cancer [5]
    Thommen DS, Schumacher TN · Cancer Cell · 2018 · cited 1,064 times (Europe PMC)
  • Research article T cell anergy [6]
    Schwartz RH · Annu Rev Immunol · 2003 · cited 1,014 times (Europe PMC)
  • Research article T cell anergy, exhaustion, senescence, and stemness in the tumor microenvironment [7]
    Crespo J, Sun H, Welling TH, Tian Z, Zou W · Curr Opin Immunol · 2013 · cited 625 times (Europe PMC)
  • Research article Mechanisms of mesenchymal stromal cell immunomodulation [8]
    English K · Immunol Cell Biol · 2013 · cited 389 times (Europe PMC)
  • Research article Anti-angiogenic agents - overcoming tumour endothelial cell anergy and improving immunotherapy outcomes [9]
    Huinen ZR, Huijbers EJM, van Beijnum JR, Nowak-Sliwinska P, Griffioen AW · Nat Rev Clin Oncol · 2021 · cited 339 times (Europe PMC)
  • Research article Models of T cell anergy: is there a common molecular mechanism? [10]
    Schwartz RH · J Exp Med · 1996 · cited 314 times (Europe PMC)

References

  1. Noviello M, Manfredi F, Ruggiero E, Perini T, Oliveira G, Cortesi F, et al.. Bone marrow central memory and memory stem T-cell exhaustion in AML patients relapsing after HSCT. . 2019. PMID 30911002 · DOI · PMC6434052
  2. Shaler CR, Choi J, Rudak PT, Memarnejadian A, Szabo PA, Tun-Abraham ME, et al.. MAIT cells launch a rapid, robust and distinct hyperinflammatory response to bacterial superantigens and quickly acquire an anergic phenotype that impedes their cognate antimicrobial function: Defining a novel mechanism of superantigen-induced immunopathology and immunosuppression. . 2017. PMID 28632753 · DOI · PMC5478099
  3. Alonso R, Flament H, Lemoine S, Sedlik C, Bottasso E, Péguillet I, et al.. Induction of anergic or regulatory tumor-specific CD4+ T cells in the tumor-draining lymph node. . 2018. PMID 29844317 · DOI · PMC5974295
  4. Wan PK, Cheng R, Johnson D, Lee C, Wu S, Mian A, et al.. Evidence of endothelial anergy and T-cell exclusion in microsatellite stable colorectal liver metastases revealed through human hemi-liver perfusion and spatial transcriptomics. . 2026. PMID 42477793 · DOI · PMC13673828
  5. Thommen DS, Schumacher TN. T Cell Dysfunction in Cancer. Cancer Cell. 2018. PMID 29634943 · DOI · PMC7116508
  6. Schwartz RH. T cell anergy. Annu Rev Immunol. 2003. PMID 12471050 · DOI
  7. Crespo J, Sun H, Welling TH, Tian Z, Zou W. T cell anergy, exhaustion, senescence, and stemness in the tumor microenvironment. Curr Opin Immunol. 2013. PMID 23298609 · DOI · PMC3636159
  8. English K. Mechanisms of mesenchymal stromal cell immunomodulation. Immunol Cell Biol. 2013. PMID 23090487 · DOI
  9. Huinen ZR, Huijbers EJM, van Beijnum JR, Nowak-Sliwinska P, Griffioen AW. Anti-angiogenic agents - overcoming tumour endothelial cell anergy and improving immunotherapy outcomes. Nat Rev Clin Oncol. 2021. PMID 33833434 · DOI
  10. Schwartz RH. Models of T cell anergy: is there a common molecular mechanism?. J Exp Med. 1996. PMID 8691122 · DOI · PMC2192660

About this article

Sources
NLM Medical Subject Headings (definition, synonyms); NCBI PubMed (counts, identifiers); Europe PMC (open-access abstracts and citation counts).
Verification
Every reference was resolved against PubMed on 2026-10-31; title, year and DOI matched.
Review state
automated source verified; no human expert review has been recorded yet.
Version
1, last updated 2026-10-29.

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Related research topics

  • Self ToleranceImmunology
  • Transplantation ToleranceImmunology
  • Immune ToleranceImmunology
  • Clonal DeletionImmunology
  • Drug ResistancePharmacology
  • Self MedicationPharmacology

All 90 articles in Immunology →

At a glance

1,633
PubMed records on this heading
5%
published since 2020
307
review articles
2
randomized trials
10
verified references below

Counts come from PubMed on 2026-10-29; they show how much has been written, not how strong the evidence is.

Related topics See all →

  • Self ToleranceImmunology
  • Transplantation ToleranceImmunology
  • Immune ToleranceImmunology
  • Clonal DeletionImmunology
  • Drug ResistancePharmacology

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